J4_6ZVK_002
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6ZVK|1|K3|A|672, 6ZVK|1|K3|A|1083, 6ZVK|1|K3|C|1085, 6ZVK|1|K3|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZVK_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0944
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZVK|1|K3|A|671
6ZVK|1|K3|A|672
6ZVK|1|K3|G|673
*
6ZVK|1|K3|C|1032
6ZVK|1|K3|G|1033
6ZVK|1|K3|A|1034
6ZVK|1|K3|A|1035
6ZVK|1|K3|A|1036
6ZVK|1|K3|G|1037
*
6ZVK|1|K3|C|1078
6ZVK|1|K3|C|1079
6ZVK|1|K3|A|1080
6ZVK|1|K3|U|1081
6ZVK|1|K3|A|1082
6ZVK|1|K3|A|1083
6ZVK|1|K3|A|1084
6ZVK|1|K3|C|1085
6ZVK|1|K3|G|1086
6ZVK|1|K3|A|1087
6ZVK|1|K3|U|1088
6ZVK|1|K3|G|1089
*
6ZVK|1|K3|U|1160
6ZVK|1|K3|U|1161
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain F3
- ribosomal protein uS15
- Chain G3
- Ribosomal protein S11
- Chain I2
- ribosomal protein eL43
- Chain J5
- Ribosomal protein S15a
- Chain O3
- 40S RIBOSOMAL PROTEIN ES26
- Chain T3
- Ribosomal protein S23
- Chain X3
- 60s ribosomal protein l41
- Chain a5
- 40S RIBOSOMAL PROTEIN US11
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: