J4_6ZVK_003
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 6ZVK|1|e2|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZVK_003 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1281
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.2
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
6ZVK|1|e2|C|111
6ZVK|1|e2|C|112
*
6ZVK|1|e2|G|278
6ZVK|1|e2|A|279
6ZVK|1|e2|G|280
6ZVK|1|e2|U|281
6ZVK|1|e2|C|282
6ZVK|1|e2|G|283
*
6ZVK|1|e2|C|304
6ZVK|1|e2|A|305
6ZVK|1|e2|A|306
6ZVK|1|e2|A|307
6ZVK|1|e2|G|308
6ZVK|1|e2|C|309
6ZVK|1|e2|G|310
*
6ZVK|1|e2|U|327
6ZVK|1|e2|A|328
6ZVK|1|e2|A|329
6ZVK|1|e2|G|330
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain A2
- uL29
- Chain B2
- 60S ribosomal protein L36
- Chain a7
- 60S ribosomal protein L13
Coloring options: