J4_7A09_002
3D structure
- PDB id
- 7A09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7A09|1|2|A|672, 7A09|1|2|A|1083, 7A09|1|2|C|1085, 7A09|1|2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7A09_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0937
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7A09|1|2|A|671
7A09|1|2|A|672
7A09|1|2|G|673
*
7A09|1|2|C|1032
7A09|1|2|G|1033
7A09|1|2|A|1034
7A09|1|2|A|1035
7A09|1|2|A|1036
7A09|1|2|G|1037
*
7A09|1|2|C|1078
7A09|1|2|C|1079
7A09|1|2|A|1080
7A09|1|2|U|1081
7A09|1|2|A|1082
7A09|1|2|A|1083
7A09|1|2|A|1084
7A09|1|2|C|1085
7A09|1|2|G|1086
7A09|1|2|A|1087
7A09|1|2|U|1088
7A09|1|2|G|1089
*
7A09|1|2|U|1160
7A09|1|2|U|1161
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Eukaryotic translation initiation factor 3 subunit C,Eukaryotic translation initiation factor 3 subunit C,Eukaryotic translation initiation factor 3 subunit C
- Chain D
- 40S ribosomal protein S15a
- Chain Q
- 40S ribosomal protein S26
- Chain W
- 60S ribosomal protein L41
- Chain i
- 40S ribosomal protein S14
- Chain j
- 40S ribosomal protein S23
- Chain m
- 40S ribosomal protein S13
- Chain n
- 40S ribosomal protein S11
Coloring options: