J4_7ABZ_001

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7ABZ|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ABZ_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1445

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7ABZ|1|1|C|268
7ABZ|1|1|C|269
*
7ABZ|1|1|G|370
7ABZ|1|1|A|371
7ABZ|1|1|G|372
7ABZ|1|1|U|373
7ABZ|1|1|A|374
7ABZ|1|1|G|375
*
7ABZ|1|1|U|399
7ABZ|1|1|G|400
7ABZ|1|1|A|401
7ABZ|1|1|A|402
7ABZ|1|1|U|403
7ABZ|1|1|A|404
7ABZ|1|1|U|405
7ABZ|1|1|G|406
*
7ABZ|1|1|C|421
7ABZ|1|1|A|422
7ABZ|1|1|A|423
7ABZ|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28