J4_7ABZ_006

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7ABZ|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ABZ_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0905

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7ABZ|1|1|U|1313
7ABZ|1|1|C|1314
*
7ABZ|1|1|G|1338
7ABZ|1|1|G|1339
7ABZ|1|1|U|1340
7ABZ|1|1|G|1341
7ABZ|1|1|A|1342
7ABZ|1|1|G|1343
*
7ABZ|1|1|C|1404
7ABZ|1|1|U|1405
*
7ABZ|1|1|A|1597
7ABZ|1|1|A|1598
7ABZ|1|1|U|1599
7ABZ|1|1|C|1600
7ABZ|1|1|G|1601
7ABZ|1|1|U|1602
7ABZ|1|1|A|1603

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34