J4_7ABZ_009

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7ABZ|1|1|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ABZ_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1545

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7ABZ|1|1|C|1833
7ABZ|1|1|U|1834
7ABZ|1|1|2MG|1835
*
7ABZ|1|1|C|1905
7ABZ|1|1|G|1906
*
7ABZ|1|1|C|1924
7ABZ|1|1|C|1925
7ABZ|1|1|U|1926
7ABZ|1|1|A|1927
7ABZ|1|1|A|1928
7ABZ|1|1|G|1929
7ABZ|1|1|G|1930
7ABZ|1|1|U|1931
7ABZ|1|1|A|1932
7ABZ|1|1|G|1933
*
7ABZ|1|1|C|1967
7ABZ|1|1|G|1968
7ABZ|1|1|A|1969
7ABZ|1|1|A|1970
7ABZ|1|1|U|1971
7ABZ|1|1|G|1972

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 7

Transfer RNA; tRNA

Chain B

50S ribosomal protein L2