J4_7ABZ_012

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7ABZ|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ABZ_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3121

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7ABZ|1|2|G|115
7ABZ|1|2|A|116
7ABZ|1|2|G|117
7ABZ|1|2|U|118
7ABZ|1|2|A|119
7ABZ|1|2|A|120
7ABZ|1|2|U|121
7ABZ|1|2|G|122
*
7ABZ|1|2|U|239
7ABZ|1|2|G|240
*
7ABZ|1|2|C|286
7ABZ|1|2|U|287
7ABZ|1|2|A|288
7ABZ|1|2|G|289
*
7ABZ|1|2|C|311
7ABZ|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17