J4_7ABZ_013

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7ABZ|1|2|C|183, 7ABZ|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ABZ_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.3305

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7ABZ|1|2|G|142
7ABZ|1|2|A|143
7ABZ|1|2|G|144
*
7ABZ|1|2|C|178
7ABZ|1|2|A|179
7ABZ|1|2|U|180
7ABZ|1|2|A|181
7ABZ|1|2|A|182
7ABZ|1|2|C|183
7ABZ|1|2|G|184
*
7ABZ|1|2|C|193
7ABZ|1|2|C|194
7ABZ|1|2|A|195
7ABZ|1|2|A|196
7ABZ|1|2|A|197
7ABZ|1|2|G|198
*
7ABZ|1|2|U|219
7ABZ|1|2|G|220
7ABZ|1|2|C|221

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20