J4_7ACJ_001

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7ACJ|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ACJ_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1699

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7ACJ|1|1|C|268
7ACJ|1|1|C|269
*
7ACJ|1|1|G|370
7ACJ|1|1|A|371
7ACJ|1|1|G|372
7ACJ|1|1|U|373
7ACJ|1|1|A|374
7ACJ|1|1|G|375
*
7ACJ|1|1|U|399
7ACJ|1|1|G|400
7ACJ|1|1|A|401
7ACJ|1|1|A|402
7ACJ|1|1|U|403
7ACJ|1|1|A|404
7ACJ|1|1|U|405
7ACJ|1|1|G|406
*
7ACJ|1|1|C|421
7ACJ|1|1|A|422
7ACJ|1|1|A|423
7ACJ|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28