J4_7AQD_005

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

7AQD|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AQD_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0868

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

7AQD|1|A|G|1349
7AQD|1|A|U|1350
7AQD|1|A|U|1351
7AQD|1|A|U|1352
7AQD|1|A|C|1353
*
7AQD|1|A|G|1377
7AQD|1|A|G|1378
7AQD|1|A|U|1379
7AQD|1|A|U|1380
7AQD|1|A|A|1381
7AQD|1|A|G|1382
*
7AQD|1|A|C|1443
7AQD|1|A|C|1444
*
7AQD|1|A|G|1642
7AQD|1|A|C|1643
7AQD|1|A|C|1644
7AQD|1|A|C|1645
7AQD|1|A|G|1646
7AQD|1|A|U|1647
7AQD|1|A|A|1648
7AQD|1|A|C|1649

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34

Chain h

50S ribosomal protein L23