J4_7AQD_009

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

7AQD|1|A|A|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AQD_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.148

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

7AQD|1|A|C|1862
7AQD|1|A|U|1863
7AQD|1|A|G|1864
*
7AQD|1|A|C|1934
7AQD|1|A|G|1935
*
7AQD|1|A|C|1953
7AQD|1|A|C|1954
7AQD|1|A|U|1955
7AQD|1|A|A|1956
7AQD|1|A|A|1957
7AQD|1|A|G|1958
7AQD|1|A|G|1959
7AQD|1|A|U|1960
7AQD|1|A|A|1961
7AQD|1|A|G|1962
*
7AQD|1|A|C|1996
7AQD|1|A|G|1997
7AQD|1|A|A|1998
7AQD|1|A|A|1999
7AQD|1|A|A|2000
7AQD|1|A|G|2001

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2