J4_7AS8_005

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

7AS8|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AS8_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0944

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7AS8|1|A|G|1349
7AS8|1|A|U|1350
7AS8|1|A|U|1351
7AS8|1|A|U|1352
7AS8|1|A|C|1353
*
7AS8|1|A|G|1377
7AS8|1|A|G|1378
7AS8|1|A|U|1379
7AS8|1|A|U|1380
7AS8|1|A|A|1381
7AS8|1|A|G|1382
*
7AS8|1|A|C|1443
7AS8|1|A|C|1444
*
7AS8|1|A|G|1642
7AS8|1|A|C|1643
7AS8|1|A|C|1644
7AS8|1|A|C|1645
7AS8|1|A|G|1646
7AS8|1|A|U|1647
7AS8|1|A|A|1648
7AS8|1|A|C|1649

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L23

Chain h

50S ribosomal protein L34