J4_7AS8_008

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AS8_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0583

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7AS8|1|A|G|1801
7AS8|1|A|A|1802
7AS8|1|A|C|1803
7AS8|1|A|U|1804
7AS8|1|A|G|1805
*
7AS8|1|A|C|1817
7AS8|1|A|A|1818
7AS8|1|A|C|1819
7AS8|1|A|A|1820
7AS8|1|A|G|1821
*
7AS8|1|A|U|1856
7AS8|1|A|G|1857
7AS8|1|A|A|1858
7AS8|1|A|C|1859
*
7AS8|1|A|G|2004
7AS8|1|A|C|2005
7AS8|1|A|A|2006
7AS8|1|A|A|2007
7AS8|1|A|C|2008

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2