J4_7ASM_008

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

7ASM|1|A|A|2315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ASM_008 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1419

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

7ASM|1|A|C|2312
7ASM|1|A|A|2313
7ASM|1|A|A|2314
7ASM|1|A|A|2315
7ASM|1|A|G|2316
*
7ASM|1|A|U|2370
7ASM|1|A|U|2371
7ASM|1|A|G|2372
7ASM|1|A|A|2373
7ASM|1|A|C|2374
*
7ASM|1|A|G|2397
7ASM|1|A|G|2398
7ASM|1|A|G|2399
*
7ASM|1|A|C|2408
7ASM|1|A|G|2409
7ASM|1|A|G|2410

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain U

50S ribosomal protein L27