J4_7ASN_001

3D structure

PDB id

7ASN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation a 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7ASN|1|A|U|451

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ASN_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2813

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7ASN|1|A|C|271
7ASN|1|A|C|272
*
7ASN|1|A|G|416
7ASN|1|A|A|417
7ASN|1|A|G|418
7ASN|1|A|U|419
7ASN|1|A|A|420
7ASN|1|A|C|421
*
7ASN|1|A|G|445
7ASN|1|A|G|446
7ASN|1|A|A|447
7ASN|1|A|A|448
7ASN|1|A|U|449
7ASN|1|A|C|450
7ASN|1|A|U|451
7ASN|1|A|G|452
*
7ASN|1|A|U|467
7ASN|1|A|A|468
7ASN|1|A|A|469
7ASN|1|A|G|470

Current chains

Chain A

23S

Nearby chains

Chain V

50S ribosomal protein L28