J4_7ASO_004

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7ASO|1|Y|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ASO_004 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.2082

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7ASO|1|Y|C|271
7ASO|1|Y|C|272
*
7ASO|1|Y|G|416
7ASO|1|Y|A|417
7ASO|1|Y|G|418
7ASO|1|Y|U|419
7ASO|1|Y|A|420
7ASO|1|Y|C|421
*
7ASO|1|Y|G|445
7ASO|1|Y|G|446
7ASO|1|Y|A|447
7ASO|1|Y|A|448
7ASO|1|Y|U|449
7ASO|1|Y|C|450
7ASO|1|Y|U|451
7ASO|1|Y|G|452
*
7ASO|1|Y|U|467
7ASO|1|Y|A|468
7ASO|1|Y|A|469
7ASO|1|Y|G|470

Current chains

Chain Y

23S

Nearby chains

Chain c

50S ribosomal protein L28