J4_7ASO_012
3D structure
- PDB id
- 7ASO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S after 30 minutes incubation at 37C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CAAG*CGUAG*CGAGU*GCGUUUAG
- Length
- 22 nucleotides
- Bulged bases
- 7ASO|1|Y|U|699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ASO_012 not in the Motif Atlas
- Homologous match to J4_4WF9_003
- Geometric discrepancy: 0.2256
- The information below is about J4_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ASO|1|Y|C|644
7ASO|1|Y|A|645
7ASO|1|Y|A|646
7ASO|1|Y|G|647
*
7ASO|1|Y|C|669
7ASO|1|Y|G|670
7ASO|1|Y|U|671
7ASO|1|Y|A|672
7ASO|1|Y|G|673
*
7ASO|1|Y|C|680
7ASO|1|Y|G|681
7ASO|1|Y|A|682
7ASO|1|Y|G|683
7ASO|1|Y|U|684
*
7ASO|1|Y|G|694
7ASO|1|Y|C|695
7ASO|1|Y|G|696
7ASO|1|Y|U|697
7ASO|1|Y|U|698
7ASO|1|Y|U|699
7ASO|1|Y|A|700
7ASO|1|Y|G|701
Current chains
- Chain Y
- 23S
Nearby chains
- Chain J
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
- Chain j
- 50S ribosomal protein L35
Coloring options: