J4_7AZO_005

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUGG*CCAAAG*CGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZO_005 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.51

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7AZO|1|16SB|G|782
7AZO|1|16SB|A|783
7AZO|1|16SB|G|784
*
7AZO|1|16SB|C|818
7AZO|1|16SB|A|819
7AZO|1|16SB|U|820
7AZO|1|16SB|G|821
7AZO|1|16SB|U|822
7AZO|1|16SB|G|823
7AZO|1|16SB|G|824
*
7AZO|1|16SB|C|845
7AZO|1|16SB|C|846
7AZO|1|16SB|A|847
7AZO|1|16SB|A|848
7AZO|1|16SB|A|849
7AZO|1|16SB|G|850
*
7AZO|1|16SB|C|860
7AZO|1|16SB|G|861
7AZO|1|16SB|C|862

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S16B

30S ribosomal protein S16

Chain S20B

30S ribosomal protein S20