J4_7AZO_007

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7AZO|1|23SA|U|433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZO_007 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0717

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7AZO|1|23SA|C|258
7AZO|1|23SA|U|259
*
7AZO|1|23SA|G|398
7AZO|1|23SA|A|399
7AZO|1|23SA|G|400
7AZO|1|23SA|U|401
7AZO|1|23SA|A|402
7AZO|1|23SA|C|403
*
7AZO|1|23SA|G|427
7AZO|1|23SA|G|428
7AZO|1|23SA|A|429
7AZO|1|23SA|A|430
7AZO|1|23SA|U|431
7AZO|1|23SA|C|432
7AZO|1|23SA|U|433
7AZO|1|23SA|G|434
*
7AZO|1|23SA|U|450
7AZO|1|23SA|A|451
7AZO|1|23SA|A|452
7AZO|1|23SA|G|453

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L28A

50S ribosomal protein L28

Chain L9A

50S ribosomal protein L9