J4_7AZO_030
3D structure
- PDB id
- 7AZO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(G7M)(3AU)CC*GU
- Length
- 16 nucleotides
- Bulged bases
- 7AZO|1|PSIB|4SU|8, 7AZO|1|PSIB|3AU|47, 7AZO|1|PSIB|C|48
- QA status
- Modified nucleotides: 4SU, G7M, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7AZO_030 not in the Motif Atlas
- Homologous match to J4_5WT1_002
- Geometric discrepancy: 0.265
- The information below is about J4_5WT1_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_40477.1
- Basepair signature
- cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7AZO|1|PSIB|A|7
7AZO|1|PSIB|4SU|8
7AZO|1|PSIB|A|9
7AZO|1|PSIB|G|10
*
7AZO|1|PSIB|C|25
7AZO|1|PSIB|A|26
7AZO|1|PSIB|G|27
*
7AZO|1|PSIB|C|43
7AZO|1|PSIB|G|44
7AZO|1|PSIB|U|45
7AZO|1|PSIB|G7M|46
7AZO|1|PSIB|3AU|47
7AZO|1|PSIB|C|48
7AZO|1|PSIB|C|49
*
7AZO|1|PSIB|G|65
7AZO|1|PSIB|U|66
Current chains
- Chain PSIB
- Phe-tRNA
Nearby chains
- Chain 16SB
- Small subunit ribosomal RNA; SSU rRNA
- Chain 23SB
- Large subunit ribosomal RNA; LSU rRNA
- Chain ASIB
- Transfer RNA; tRNA
- Chain L16B
- 50S ribosomal protein L16
- Chain S13B
- 30S ribosomal protein S13
Coloring options: