J4_7AZS_017

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7AZS|1|23SB|U|433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZS_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0893

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7AZS|1|23SB|C|258
7AZS|1|23SB|U|259
*
7AZS|1|23SB|G|398
7AZS|1|23SB|A|399
7AZS|1|23SB|G|400
7AZS|1|23SB|U|401
7AZS|1|23SB|A|402
7AZS|1|23SB|C|403
*
7AZS|1|23SB|G|427
7AZS|1|23SB|G|428
7AZS|1|23SB|A|429
7AZS|1|23SB|A|430
7AZS|1|23SB|U|431
7AZS|1|23SB|C|432
7AZS|1|23SB|U|433
7AZS|1|23SB|G|434
*
7AZS|1|23SB|U|450
7AZS|1|23SB|A|451
7AZS|1|23SB|A|452
7AZS|1|23SB|G|453

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L28B

50S ribosomal protein L28

Chain L9B

50S ribosomal protein L9