J4_7AZS_023

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZS_023 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0572

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7AZS|1|23SB|G|1806
7AZS|1|23SB|A|1807
7AZS|1|23SB|C|1808
7AZS|1|23SB|U|1809
7AZS|1|23SB|G|1810
*
7AZS|1|23SB|C|1822
7AZS|1|23SB|A|1823
7AZS|1|23SB|C|1824
7AZS|1|23SB|A|1825
7AZS|1|23SB|G|1826
*
7AZS|1|23SB|C|1861
7AZS|1|23SB|G|1862
7AZS|1|23SB|A|1863
7AZS|1|23SB|C|1864
*
7AZS|1|23SB|G|2000
7AZS|1|23SB|U|2001
7AZS|1|23SB|A|2002
7AZS|1|23SB|A|2003
7AZS|1|23SB|C|2004

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain 16SB

Small subunit ribosomal RNA; SSU rRNA

Chain L2B

50S ribosomal protein L2