J4_7B5K_009

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7B5K_009 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0579

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7B5K|1|A|A|1772
7B5K|1|A|A|1773
7B5K|1|A|C|1774
7B5K|1|A|U|1775
7B5K|1|A|G|1776
*
7B5K|1|A|C|1788
7B5K|1|A|A|1789
7B5K|1|A|C|1790
7B5K|1|A|A|1791
7B5K|1|A|G|1792
*
7B5K|1|A|U|1827
7B5K|1|A|G|1828
7B5K|1|A|A|1829
7B5K|1|A|C|1830
*
7B5K|1|A|G|1975
7B5K|1|A|U|1976
7B5K|1|A|A|1977
7B5K|1|A|A|1978
7B5K|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2