J4_7BT6_004
3D structure
- PDB id
- 7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- GG*CU*AG*UC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7BT6_004 not in the Motif Atlas
- Homologous match to J4_8C3A_005
- Geometric discrepancy: 0.0965
- The information below is about J4_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7BT6|1|1|G|1674
7BT6|1|1|G|1675
*
7BT6|1|1|C|1693
7BT6|1|1|U|1694
*
7BT6|1|1|A|1752
7BT6|1|1|G|1753
*
7BT6|1|1|U|1772
7BT6|1|1|C|1773
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain U
- 60S ribosomal protein L22-A
- Chain g
- 60S ribosomal protein L34-A
- Chain k
- 60S ribosomal protein L38
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