J4_7CPJ_008

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7CPJ_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.067

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7CPJ|1|A|A|1772
7CPJ|1|A|A|1773
7CPJ|1|A|C|1774
7CPJ|1|A|U|1775
7CPJ|1|A|G|1776
*
7CPJ|1|A|C|1788
7CPJ|1|A|A|1789
7CPJ|1|A|C|1790
7CPJ|1|A|A|1791
7CPJ|1|A|G|1792
*
7CPJ|1|A|U|1827
7CPJ|1|A|G|1828
7CPJ|1|A|A|1829
7CPJ|1|A|C|1830
*
7CPJ|1|A|G|1975
7CPJ|1|A|U|1976
7CPJ|1|A|A|1977
7CPJ|1|A|A|1978
7CPJ|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA