J4_7CPU_007
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7CPU_007 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0924
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7CPU|1|L5|G|3291
7CPU|1|L5|A|3292
7CPU|1|L5|C|3293
7CPU|1|L5|U|3294
7CPU|1|L5|G|3295
*
7CPU|1|L5|C|3307
7CPU|1|L5|A|3308
7CPU|1|L5|A|3309
7CPU|1|L5|A|3310
7CPU|1|L5|G|3311
*
7CPU|1|L5|U|3347
7CPU|1|L5|G|3348
7CPU|1|L5|A|3349
7CPU|1|L5|U|3350
7CPU|1|L5|U|3351
*
7CPU|1|L5|A|3478
7CPU|1|L5|U|3479
7CPU|1|L5|G|3480
7CPU|1|L5|A|3481
7CPU|1|L5|A|3482
7CPU|1|L5|C|3483
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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