J4_7D6Z_008
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AACUG*CACAG*UGAC*GUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7D6Z_008 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.0683
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7D6Z|1|A|A|1772
7D6Z|1|A|A|1773
7D6Z|1|A|C|1774
7D6Z|1|A|U|1775
7D6Z|1|A|G|1776
*
7D6Z|1|A|C|1788
7D6Z|1|A|A|1789
7D6Z|1|A|C|1790
7D6Z|1|A|A|1791
7D6Z|1|A|G|1792
*
7D6Z|1|A|U|1827
7D6Z|1|A|G|1828
7D6Z|1|A|A|1829
7D6Z|1|A|C|1830
*
7D6Z|1|A|G|1975
7D6Z|1|A|U|1976
7D6Z|1|A|A|1977
7D6Z|1|A|A|1978
7D6Z|1|A|U|1979
Current chains
- Chain A
- 23S ribosomal rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: