J4_7D80_018

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7D80_018 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.1244

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7D80|1|A|A|1772
7D80|1|A|A|1773
7D80|1|A|C|1774
7D80|1|A|U|1775
7D80|1|A|G|1776
*
7D80|1|A|C|1788
7D80|1|A|A|1789
7D80|1|A|C|1790
7D80|1|A|A|1791
7D80|1|A|G|1792
*
7D80|1|A|U|1827
7D80|1|A|G|1828
7D80|1|A|A|1829
7D80|1|A|C|1830
*
7D80|1|A|G|1975
7D80|1|A|U|1976
7D80|1|A|A|1977
7D80|1|A|A|1978
7D80|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2