J4_7DUH_004

3D structure

PDB id

7DUH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7DUH_004 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1149

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

7DUH|1|A|G|142
7DUH|1|A|A|143
7DUH|1|A|G|144
*
7DUH|1|A|C|178
7DUH|1|A|A|179
7DUH|1|A|U|180
7DUH|1|A|G|181
7DUH|1|A|U|182
7DUH|1|A|G|183
*
7DUH|1|A|C|194
7DUH|1|A|A|195
7DUH|1|A|A|196
7DUH|1|A|A|197
7DUH|1|A|G|198
*
7DUH|1|A|C|219
7DUH|1|A|G|220
7DUH|1|A|C|221

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain T

30S ribosomal protein S20