J4_7DUK_002

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7DUK_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0891

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

7DUK|1|A|G|142
7DUK|1|A|A|143
7DUK|1|A|G|144
*
7DUK|1|A|C|178
7DUK|1|A|A|179
7DUK|1|A|U|180
7DUK|1|A|G|181
7DUK|1|A|U|182
7DUK|1|A|G|183
*
7DUK|1|A|C|194
7DUK|1|A|A|195
7DUK|1|A|A|196
7DUK|1|A|A|197
7DUK|1|A|G|198
*
7DUK|1|A|C|219
7DUK|1|A|G|220
7DUK|1|A|C|221

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain T

30S ribosomal protein S20