J4_7DUL_002

3D structure

PDB id

7DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

7DUL|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7DUL_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.093

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

7DUL|1|A|G|142
7DUL|1|A|A|143
7DUL|1|A|G|144
*
7DUL|1|A|C|178
7DUL|1|A|A|179
7DUL|1|A|U|180
7DUL|1|A|G|181
7DUL|1|A|U|182
7DUL|1|A|G|183
*
7DUL|1|A|C|194
7DUL|1|A|A|195
7DUL|1|A|A|196
7DUL|1|A|A|197
7DUL|1|A|G|198
*
7DUL|1|A|C|219
7DUL|1|A|G|220
7DUL|1|A|C|221

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain T

30S ribosomal protein S20