J4_7F0D_003
3D structure
- PDB id
- 7F0D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGACAAG*CC*GUAC*GG
- Length
- 15 nucleotides
- Bulged bases
- 7F0D|1|A|G|1402, 7F0D|1|A|A|1403, 7F0D|1|A|C|1404, 7F0D|1|A|A|1405, 7F0D|1|A|A|1406
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7F0D_003 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.4929
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7F0D|1|A|C|1401
7F0D|1|A|G|1402
7F0D|1|A|A|1403
7F0D|1|A|C|1404
7F0D|1|A|A|1405
7F0D|1|A|A|1406
7F0D|1|A|G|1407
*
7F0D|1|A|C|1425
7F0D|1|A|C|1426
*
7F0D|1|A|G|1880
7F0D|1|A|U|1881
7F0D|1|A|A|1882
7F0D|1|A|C|1883
*
7F0D|1|A|G|2247
7F0D|1|A|G|2248
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
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