J4_7JQC_002
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7JQC|1|A|A|672, 7JQC|1|A|A|1083, 7JQC|1|A|C|1085, 7JQC|1|A|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7JQC_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1132
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7JQC|1|A|A|671
7JQC|1|A|A|672
7JQC|1|A|G|673
*
7JQC|1|A|C|1032
7JQC|1|A|G|1033
7JQC|1|A|A|1034
7JQC|1|A|A|1035
7JQC|1|A|A|1036
7JQC|1|A|G|1037
*
7JQC|1|A|C|1078
7JQC|1|A|C|1079
7JQC|1|A|A|1080
7JQC|1|A|U|1081
7JQC|1|A|A|1082
7JQC|1|A|A|1083
7JQC|1|A|A|1084
7JQC|1|A|C|1085
7JQC|1|A|G|1086
7JQC|1|A|A|1087
7JQC|1|A|U|1088
7JQC|1|A|G|1089
*
7JQC|1|A|U|1160
7JQC|1|A|U|1161
Current chains
- Chain A
- rRNA
Nearby chains
- Chain O
- uS17
- Chain P
- uS15
- Chain X
- Uncharacterized protein
- Chain Y
- uS8
- Chain b
- 40S ribosomal protein S26
- Chain c
- Uncharacterized protein
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