J4_7JQC_004
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 7JQC|1|A|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7JQC_004 not in the Motif Atlas
- Homologous match to J4_8CRE_021
- Geometric discrepancy: 0.1698
- The information below is about J4_8CRE_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7JQC|1|A|C|98
7JQC|1|A|A|99
7JQC|1|A|U|100
7JQC|1|A|U|101
7JQC|1|A|A|102
7JQC|1|A|A|103
7JQC|1|A|A|104
7JQC|1|A|U|105
7JQC|1|A|C|106
*
7JQC|1|A|G|355
7JQC|1|A|C|356
7JQC|1|A|C|357
*
7JQC|1|A|G|405
7JQC|1|A|U|406
7JQC|1|A|G|407
7JQC|1|A|A|408
7JQC|1|A|C|409
*
7JQC|1|A|G|431
7JQC|1|A|G|432
Current chains
- Chain A
- rRNA
Nearby chains
- Chain J
- eS8
- Chain M
- 40S ribosomal protein S4
- Chain O
- uS17
- Chain c
- Uncharacterized protein
Coloring options: