J4_7JQL_012

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JQL_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1456

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

7JQL|1|1a|G|142
7JQL|1|1a|A|143
7JQL|1|1a|G|144
*
7JQL|1|1a|C|178
7JQL|1|1a|A|179
7JQL|1|1a|U|180
7JQL|1|1a|G|181
7JQL|1|1a|U|182
7JQL|1|1a|G|183
*
7JQL|1|1a|C|194
7JQL|1|1a|A|195
7JQL|1|1a|A|196
7JQL|1|1a|A|197
7JQL|1|1a|G|198
*
7JQL|1|1a|C|219
7JQL|1|1a|G|220
7JQL|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20