J4_7JQL_019

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

7JQL|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JQL_019 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0934

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7JQL|1|2A|U|1313
7JQL|1|2A|C|1314
*
7JQL|1|2A|G|1338
7JQL|1|2A|G|1339
7JQL|1|2A|U|1340
7JQL|1|2A|U|1341
7JQL|1|2A|A|1342
7JQL|1|2A|G|1343
*
7JQL|1|2A|C|1404
7JQL|1|2A|U|1405
*
7JQL|1|2A|A|1597
7JQL|1|2A|C|1598
7JQL|1|2A|C|1599
7JQL|1|2A|C|1600
7JQL|1|2A|G|1601
7JQL|1|2A|U|1602
7JQL|1|2A|A|1603

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23