J4_7JQL_021

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JQL_021 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0717

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7JQL|1|2A|G|1772
7JQL|1|2A|A|1773
7JQL|1|2A|C|1774
7JQL|1|2A|U|1775
7JQL|1|2A|G|1776
*
7JQL|1|2A|C|1788
7JQL|1|2A|A|1789
7JQL|1|2A|C|1790
7JQL|1|2A|A|1791
7JQL|1|2A|G|1792
*
7JQL|1|2A|C|1827
7JQL|1|2A|G|1828
7JQL|1|2A|A|1829
7JQL|1|2A|C|1830
*
7JQL|1|2A|G|1975
7JQL|1|2A|U|1976
7JQL|1|2A|A|1977
7JQL|1|2A|A|1978
7JQL|1|2A|C|1979

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA