3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
7JSS|1|1|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7JSS_009 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.1554
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

7JSS|1|1|C|2285
7JSS|1|1|G|2286
7JSS|1|1|A|2287
7JSS|1|1|A|2288
7JSS|1|1|G|2289
*
7JSS|1|1|U|2343
7JSS|1|1|U|2344
7JSS|1|1|G|2345
7JSS|1|1|A|2346
7JSS|1|1|C|2347
*
7JSS|1|1|G|2370
7JSS|1|1|G|2371
7JSS|1|1|U|2372
*
7JSS|1|1|A|2381
7JSS|1|1|G|2382
7JSS|1|1|G|2383

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L33
Chain E
50S ribosomal protein L35
Chain o
50S ribosomal protein L18
Chain w
50S ribosomal protein L27

Coloring options:


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