J4_7JSW_001

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7JSW|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JSW_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1481

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7JSW|1|1|C|268
7JSW|1|1|C|269
*
7JSW|1|1|G|370
7JSW|1|1|A|371
7JSW|1|1|G|372
7JSW|1|1|U|373
7JSW|1|1|A|374
7JSW|1|1|G|375
*
7JSW|1|1|U|399
7JSW|1|1|G|400
7JSW|1|1|A|401
7JSW|1|1|A|402
7JSW|1|1|U|403
7JSW|1|1|A|404
7JSW|1|1|U|405
7JSW|1|1|G|406
*
7JSW|1|1|C|421
7JSW|1|1|A|422
7JSW|1|1|A|423
7JSW|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28