J4_7JSW_005

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7JSW|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JSW_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1001

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7JSW|1|1|U|1313
7JSW|1|1|C|1314
*
7JSW|1|1|G|1338
7JSW|1|1|G|1339
7JSW|1|1|U|1340
7JSW|1|1|G|1341
7JSW|1|1|A|1342
7JSW|1|1|G|1343
*
7JSW|1|1|C|1404
7JSW|1|1|U|1405
*
7JSW|1|1|A|1597
7JSW|1|1|A|1598
7JSW|1|1|U|1599
7JSW|1|1|C|1600
7JSW|1|1|G|1601
7JSW|1|1|U|1602
7JSW|1|1|A|1603

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23