J4_7JT2_007

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JT2_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0823

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7JT2|1|1|A|1772
7JT2|1|1|A|1773
7JT2|1|1|C|1774
7JT2|1|1|U|1775
7JT2|1|1|G|1776
*
7JT2|1|1|C|1788
7JT2|1|1|A|1789
7JT2|1|1|C|1790
7JT2|1|1|A|1791
7JT2|1|1|G|1792
*
7JT2|1|1|U|1827
7JT2|1|1|G|1828
7JT2|1|1|A|1829
7JT2|1|1|C|1830
*
7JT2|1|1|G|1975
7JT2|1|1|U|1976
7JT2|1|1|A|1977
7JT2|1|1|A|1978
7JT2|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2