3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
7JT3|1|1|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7JT3_001 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.2033
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

7JT3|1|1|C|268
7JT3|1|1|C|269
*
7JT3|1|1|G|370
7JT3|1|1|A|371
7JT3|1|1|G|372
7JT3|1|1|U|373
7JT3|1|1|A|374
7JT3|1|1|G|375
*
7JT3|1|1|U|399
7JT3|1|1|G|400
7JT3|1|1|A|401
7JT3|1|1|A|402
7JT3|1|1|U|403
7JT3|1|1|A|404
7JT3|1|1|U|405
7JT3|1|1|G|406
*
7JT3|1|1|C|421
7JT3|1|1|A|422
7JT3|1|1|A|423
7JT3|1|1|G|424

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain g
50S ribosomal protein L9
Chain x
50S ribosomal protein L28

Coloring options:


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