3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
7JT3|1|1|G|1271, 7JT3|1|1|A|1272, 7JT3|1|1|U|1273, 7JT3|1|1|A|1274, 7JT3|1|1|C|1646, 7JT3|1|1|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7JT3_003 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.1547
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

7JT3|1|1|C|1270
7JT3|1|1|G|1271
7JT3|1|1|A|1272
7JT3|1|1|U|1273
7JT3|1|1|A|1274
7JT3|1|1|A|1275
7JT3|1|1|A|1276
*
7JT3|1|1|U|1294
7JT3|1|1|C|1295
*
7JT3|1|1|G|1645
7JT3|1|1|C|1646
7JT3|1|1|U|1647
7JT3|1|1|U|1648
*
7JT3|1|1|A|2009
7JT3|1|1|G|2010

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain n
50S ribosomal protein L17
Chain s
50S ribosomal protein L22

Coloring options:


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