3D structure

PDB id
7K52 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7K52_007 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.0965
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

7K52|1|1|A|1772
7K52|1|1|A|1773
7K52|1|1|C|1774
7K52|1|1|U|1775
7K52|1|1|G|1776
*
7K52|1|1|C|1788
7K52|1|1|A|1789
7K52|1|1|C|1790
7K52|1|1|A|1791
7K52|1|1|G|1792
*
7K52|1|1|U|1827
7K52|1|1|G|1828
7K52|1|1|A|1829
7K52|1|1|C|1830
*
7K52|1|1|G|1975
7K52|1|1|U|1976
7K52|1|1|A|1977
7K52|1|1|A|1978
7K52|1|1|U|1979

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA
Chain b
50S ribosomal protein L2

Coloring options:


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