3D structure

PDB id
7K54 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
7K54|1|1|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7K54_009 not in the Motif Atlas
Homologous match to J4_9DFE_009
Geometric discrepancy: 0.1442
The information below is about J4_9DFE_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

7K54|1|1|C|2285
7K54|1|1|G|2286
7K54|1|1|A|2287
7K54|1|1|A|2288
7K54|1|1|G|2289
*
7K54|1|1|U|2343
7K54|1|1|U|2344
7K54|1|1|G|2345
7K54|1|1|A|2346
7K54|1|1|C|2347
*
7K54|1|1|G|2370
7K54|1|1|G|2371
7K54|1|1|U|2372
*
7K54|1|1|A|2381
7K54|1|1|G|2382
7K54|1|1|G|2383

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L33
Chain E
50S ribosomal protein L35
Chain o
50S ribosomal protein L18
Chain w
50S ribosomal protein L27

Coloring options:


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