J4_7LH5_012

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LH5_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0579

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7LH5|1|BA|G|1772
7LH5|1|BA|A|1773
7LH5|1|BA|C|1774
7LH5|1|BA|U|1775
7LH5|1|BA|G|1776
*
7LH5|1|BA|C|1788
7LH5|1|BA|A|1789
7LH5|1|BA|C|1790
7LH5|1|BA|A|1791
7LH5|1|BA|G|1792
*
7LH5|1|BA|C|1827
7LH5|1|BA|G|1828
7LH5|1|BA|A|1829
7LH5|1|BA|C|1830
*
7LH5|1|BA|G|1975
7LH5|1|BA|U|1976
7LH5|1|BA|A|1977
7LH5|1|BA|A|1978
7LH5|1|BA|C|1979

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2