J4_7LH5_014

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

7LH5|1|BA|A|2288, 7LH5|1|BA|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LH5_014 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.1692

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

7LH5|1|BA|C|2285
7LH5|1|BA|A|2286
7LH5|1|BA|A|2287
7LH5|1|BA|A|2288
7LH5|1|BA|G|2289
*
7LH5|1|BA|C|2343
7LH5|1|BA|U|2344
7LH5|1|BA|G|2345
7LH5|1|BA|A|2346
7LH5|1|BA|C|2347
*
7LH5|1|BA|G|2370
7LH5|1|BA|G|2371
7LH5|1|BA|G|2372
*
7LH5|1|BA|C|2381
7LH5|1|BA|G|2382
7LH5|1|BA|G|2383

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain B6

50S ribosomal protein L33

Chain B8

50S ribosomal protein L35