J4_7LS1_012
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 7LS1|1|m2|G|409
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7LS1_012 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.2135
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.3
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7LS1|1|m2|C|98
7LS1|1|m2|A|99
7LS1|1|m2|U|100
7LS1|1|m2|U|101
7LS1|1|m2|A|102
7LS1|1|m2|A|103
7LS1|1|m2|A|104
7LS1|1|m2|U|105
7LS1|1|m2|C|106
*
7LS1|1|m2|G|357
7LS1|1|m2|C|358
7LS1|1|m2|C|359
*
7LS1|1|m2|G|407
7LS1|1|m2|U|408
7LS1|1|m2|G|409
7LS1|1|m2|A|410
7LS1|1|m2|C|411
*
7LS1|1|m2|G|433
7LS1|1|m2|G|434
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain E3
- 40S ribosomal protein S23
- Chain r2
- 40S ribosomal protein S4, X isoform
- Chain u
- 40S ribosomal protein S8
- Chain w2
- 40S ribosomal protein S11
Coloring options: