J4_7LS2_005
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7LS2|1|A2|C|2192
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7LS2_005 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0915
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7LS2|1|A2|G|2161
7LS2|1|A2|G|2162
7LS2|1|A2|U|2163
7LS2|1|A2|U|2164
7LS2|1|A2|C|2165
*
7LS2|1|A2|G|2189
7LS2|1|A2|G|2190
7LS2|1|A2|U|2191
7LS2|1|A2|C|2192
7LS2|1|A2|A|2193
7LS2|1|A2|G|2194
*
7LS2|1|A2|U|2293
7LS2|1|A2|C|2294
*
7LS2|1|A2|G|2532
7LS2|1|A2|G|2533
7LS2|1|A2|C|2534
7LS2|1|A2|C|2535
7LS2|1|A2|G|2536
7LS2|1|A2|U|2537
7LS2|1|A2|A|2538
7LS2|1|A2|C|2539
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L2
- 60S ribosomal protein L19
- Chain R2
- 60S ribosomal protein L23a
- Chain a2
- 60S ribosomal protein L34
- Chain d2
- 60S ribosomal protein L37
- Chain e2
- 60S ribosomal protein L38
- Chain f2
- 60S ribosomal protein L39
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