J4_7LS2_009

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7LS2|1|A2|U|3429, 7LS2|1|A2|U|3474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LS2_009 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.2012

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

7LS2|1|A2|C|3352
7LS2|1|A2|U|3353
7LS2|1|A2|G|3354
*
7LS2|1|A2|C|3408
7LS2|1|A2|G|3409
*
7LS2|1|A2|C|3427
7LS2|1|A2|U|3428
7LS2|1|A2|U|3429
7LS2|1|A2|A|3430
7LS2|1|A2|A|3431
7LS2|1|A2|G|3432
7LS2|1|A2|G|3433
7LS2|1|A2|U|3434
7LS2|1|A2|A|3435
7LS2|1|A2|G|3436
*
7LS2|1|A2|U|3470
7LS2|1|A2|G|3471
7LS2|1|A2|A|3472
7LS2|1|A2|A|3473
7LS2|1|A2|U|3474
7LS2|1|A2|G|3475

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain h2

60S ribosomal protein L41

Chain m2

Small subunit ribosomal RNA; SSU rRNA